Links

Text-based database searching

National Center for Biotechnology Information (NCBI)ENTREZ Home: http://www.ncbi.nlm.nih.gov/Entrez/

ENTREZ Help: http://www.ncbi.nlm.nih.gov/Entrez/entrezhelp.html

European Bioinformatics Institute (EBI)SRS http://srs.ebi.ac.uk/

SRS Help: http://srs.ebi.ac.uk/srs5/man/mi_srswww.html

GenomeNet (Kyoto Univeristy and University of Tokyo)DBGET: http://www.genome.ad.jp/dbget/dbget2.html

DBGET Help: http://www.genome.ad.jp/dbget_manual.html

Sequence Searching Blast Web Site: http://www.ncbi.nlm.nih.gov/BLAST/

Blast FTP site: ftp://ncbi.nlm.nih.gov/blast/

FASTA at EBI: http://www2.ebi.ac.uk/fasta3/

FASTA FTP: ftp://ftp.virgina.edu/pub/fasta

Seqence search site: http://sss.stanford.edu/sss/

Softwares NCBI Bast2.0 Server: http://www.ncbi.nlm.nih.gov/cgi-bin/BLAST/nph-newblast?Jform=1

WUBlast Software: http://blast.wustl.edu/

Clustalw software: ftp://ftp-igbmc.u-strasbg.fr/pub/ClustralW/

HMMER software: http://hmmer.wustl.edu/SAM: http://www.cse.ucsc.edu/research/compbio/sam.html

PFTOOLS: http://ulrec3.unil.ch:80/profile/

HMMpro http://www.netid.com

GENEWISE: http://www.sanger.ac.uk/Software/Wise2/

PROBE: ftp://ncbi.nlm.nih.gov/pub/neuwald/probe1.0/

META-MEME: http://www.cse.ucsd.edu/users/bgrundy/metameme.1.o.html

Blocks: http://www.blocks.fhcrc.org

BCM Search Launcher: http://kiwi.imgen.bcm.tmc.edu:8088/searchlauncher/launcher.html

WashU IBC: http://www.ibc.wustl.edu/service/clustal.html